FastQCFastQC Report
Fri 10 Mar 2023
EGAF00002443593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences793238
Sequences flagged as poor quality0
Sequence length14-53200
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT96441.2157763495949512No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT53630.6760896477475865No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT29730.3747929373025498No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC18310.2308260572488963No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT17520.22086687728021095No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT17340.21859769703418144No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT12860.16212032202189003No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT11460.14447114233054897No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC11380.14346261777675803No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC11220.1414455686691762No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT10970.1382939294385796No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT9770.12316606113171583No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT9720.12253573328559651No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT9330.11761917608586578No Hit
TTGTTGTACTTCGTTCGGTTACGTATTGCTACTTGCCTGTCGCTCTATCT8990.11333294673225437No Hit
TTGTTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC8520.10740786497873275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)