FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002443605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences644971
Sequences flagged as poor quality0
Sequence length13-55474
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT58710.9102734851644492No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT40360.6257645692597031No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT24450.37908681165509767No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT16840.2610970105632657No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT12570.19489248353801955No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC12570.19489248353801955No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT10650.16512370323626954No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT9980.1547356392768047No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT7820.12124576143733594No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT7630.1182998925533086No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT7070.10961733163196484No Hit
TTATTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6920.10729164567089063No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC6880.1066714627479375No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC6770.10496595970981643No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT6630.10279531947948047No Hit
TTGGTAATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC6490.10062467924914455No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6470.10031458778766797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)