FastQCFastQC Report
Wed 22 Mar 2023
EGAF00002443608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555915
Sequences flagged as poor quality0
Sequence length22-65386
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT59171.0643713517354272No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT37010.6657492602286321No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT19960.35904769614059706No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT11280.20290871805941557No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC10800.19427430452497235No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT10260.18456058929872374No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT8400.15110223685275628No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT7730.13905003462759596No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT7610.13689143124398515No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT7490.13473282786037435No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC7300.13131503916965723No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT7270.13077538832375452No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC7030.12645818155653293No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6420.115485281023178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)