FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002443611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352369
Sequences flagged as poor quality0
Sequence length21-42751
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT45531.2921113945891949No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT18680.5301260894119517No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT11310.32097034642661526No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT10030.2846447899786871No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6990.19837159341485772No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC6850.19439848567836557No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT6020.17084363266916214No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT5420.1538160280841958No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC5080.14416705215271491No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT4970.1410453246454711No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT4810.13650463008948005No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC4640.1316801421237396No Hit
TTGTTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC3910.11096322321203057No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT3790.1075577022950373No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT3710.10528735501704178No Hit
TTGTTGTACTTCGTTCGGTTACGTATTGCTACTTGCCTGTCGCTCTATCT3620.10273321432929683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)