FastQCFastQC Report
Wed 22 Mar 2023
EGAF00002443623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548395
Sequences flagged as poor quality0
Sequence length5-60156
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT40380.7363305646477447No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT28420.5182395900764959No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT28220.5145925838127627No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT11880.2166321720657555No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT11200.20423235076906243No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC9730.177426854730623No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT7240.13202162674714393No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT7120.129833422988904No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT5790.10558083133507781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)