FastQCFastQC Report
Mon 6 May 2024
EGAF00002444217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26471917
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA495000.18699061348673765No Hit
CTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCG319220.12058816896411394No Hit
CTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGG310380.11724878103841138No Hit
CTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCACCATTGGGAT283510.1070984016760101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)