FastQCFastQC Report
Sat 11 May 2024
EGAF00002444218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26471917
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length34-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG414950.15675102033600363No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG370180.13983875818286978No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT297800.11249657514414238No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC271100.10241041478031229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)