FastQCFastQC Report
Wed 1 May 2024
EGAF00002444233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35848042
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5293721.4767110571896784No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4786441.3352026311506777No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG381020.1062875344767784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)