FastQCFastQC Report
Fri 3 May 2024
EGAF00002444246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27445140
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length32-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG596650.21739732426214625No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG585380.21329095060181874No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT453520.16524601441275213No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC379620.1383195713339411No Hit
TCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTT351840.1281975606610132No Hit
CTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTA322970.11767839406175375No Hit
CTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAA297040.10823045537388404No Hit
CTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCT288680.10518437872789135No Hit
CCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTT284620.10370506399311498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)