FastQCFastQC Report
Wed 1 May 2024
EGAF00002444247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31007612
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGG363770.11731635444870764No Hit
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA350260.11295935978559071No Hit
CTTTAATCGTTGAACAAACGAACCTTTAATAGCGGCTGCACCATTGGGAT320970.10351329215548749No Hit
CTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCG317850.1025070876144864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)