FastQCFastQC Report
Wed 1 May 2024
EGAF00002444289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37976416
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAA564840.14873441453769626No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG542830.14293871227869423No Hit
CTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGCG459010.12086711921419863No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG395170.1040566861285699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)