FastQCFastQC Report
Wed 1 May 2024
EGAF00002444290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37976416
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length34-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG600820.15820871564078084No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC428910.11294114747426402No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT410390.10806443662298201No Hit
TTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTT400720.10551811945603293No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT382510.10072303821403264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)