FastQCFastQC Report
Sun 5 May 2024
EGAF00002444294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25056232
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length33-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG517620.20658333623347677No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC339960.13567882034297893No Hit
TTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTT313450.12509861818009987No Hit
TCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTT280520.11195617920523725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)