FastQCFastQC Report
Fri 10 May 2024
EGAF00002444383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21880489
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCA292670.13375843656876224No Hit
CCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC271960.12429338302265547No Hit
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA227310.10388707491866384No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA225060.1028587615203664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)