FastQCFastQC Report
Fri 10 May 2024
EGAF00002444384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21880489
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length31-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT513900.23486678017113788No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA314220.1436073937835667No Hit
CTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAATGTG232570.10629104312979477No Hit
CTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTG228040.10422070548788923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)