FastQCFastQC Report
Fri 10 May 2024
EGAF00002444423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20648985
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length20-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCCCAGTTTAGTAGT521170.252394972440534No Hit
CTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCCAA454610.22016094253543214No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG344800.16698157318628495No Hit
CAGGAAGCCTGCACCTCAGGGGTGAATTCTTTGCCGAAATGGATTGCCAA296100.1433968788296374No Hit
GTGCTTTATGGCATCTCCCAAGGAAGTCAGCACCTTCTTGCCATGTGCCT260080.12595292214120937No Hit
GTGAATTCTTTGCCGAAATGGATTGCCAAAACGGTCACCAGCACATTTCC235320.11396201798780908No Hit
AGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTC231220.1119764482370441No Hit
GCCAGGAAGCCTGCACCTCAGGGGTGAATTCTTTGCCGAAATGGATTGCC225100.10901262217004855No Hit
CTTGAAAGCTCTGCATCATGGGCAGTGAGCTCAGTGGTATCTGGAGGACA207220.10035360091549293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)