FastQCFastQC Report
Fri 10 May 2024
EGAF00002444424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20648985
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length32-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1102810.5340746772783264No Hit
CTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCA667090.323061884155565No Hit
GGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCAT323610.1567195675719654No Hit
GAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCCA286850.13891723975778955No Hit
CTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGG238860.11567638796773788No Hit
GTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCAC226820.10984559289475972No Hit
GTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCC218900.10601005327864783No Hit
GGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCCAT212090.1027120703511577No Hit
GTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAG212040.10268785608590447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)