FastQCFastQC Report
Fri 10 May 2024
EGAF00002444426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002444426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21537897
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length34-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG861180.39984405162676745No Hit
CTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCA371530.17250059279232324No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC324640.15072966501789845No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT269060.12492398863268776No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT251050.11656198374428108No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT242790.11272688322355706No Hit
CTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACT216510.10052513483558771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)