FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002446255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74514036
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3778100.5070319905903365No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG3096980.41562370880031246No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACC1950470.2617587376423953No Hit
GCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGC1251660.16797640648534995No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)