FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002446257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50204492
Sequences flagged as poor quality0
Sequence length76
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1002770.19973710718953194No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG947150.18865841725875843No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACC908010.18086230212228818No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT900030.17927280291970688No Hit
GGGGAGGGAGCGAGCGGCGCGCGCGGGGTGGGGCGGGGGAGGGCCGCGAG652070.12988280012872155No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT551840.10991845112186376No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG541690.10789671967998402No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT509460.10147697540690184No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)