FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002446267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46914403
Sequences flagged as poor quality0
Sequence length76
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG16406583.4971307212414064No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACC11986512.554974428641882No Hit
GCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGC5342151.1387014772414348No Hit
CGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGG5047771.0759531566457319No Hit
GGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGAC3723830.7937498426655882No Hit
GGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACCGC3723190.7936134240054169No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG3243330.691329270458797No Hit
CGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAG3063240.6529423384115108No Hit
GGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACCG2981930.6356107739450505No Hit
CCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCG2664190.5678831722530925No Hit
GCGTCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG2156780.459726621694408No Hit
GGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAAC2015810.4296782802500972No Hit
GTGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG1969760.41986253134245366No Hit
GAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACG1674880.357007633668492No Hit
GAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACCGCC1514950.3229178894166041No Hit
GGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGG1385510.29532721539694323No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1302360.2776034472824902No Hit
GCGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTA1274760.2717203925625996No Hit
CGCGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGT1241330.26459464911021036No Hit
CGGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTT1199000.25557183366481295No Hit
CCGCGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGG1114580.23757735977158229No Hit
CTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACC1078330.2298505215978129No Hit
CCCCAGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCA937340.19979791707037176No Hit
GCGCTGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG846660.18046909815733986No Hit
GGGAGGGCGAGGAGGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAGG745660.15894052834904454No Hit
GCCGCGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGG683480.14568660289676924No Hit
GGCGAGGAGGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAG678800.14468904144426606No Hit
CCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG661300.140958843705205No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAGCC641570.13675331219710926No Hit
GGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGT626220.1334813958945614No Hit
GTTGGTTTGGGCTCTTCCCGTTTCGCTCGCCGCTACTCAGGGAATCGATT588800.12550516735766626No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA572160.12195828219321048No Hit
GGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTC551700.11759714815085678No Hit
CACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCA543090.11576189086323875No Hit
CCCCGGGGTAGCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCA542430.11562120911993701No Hit
GGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAA534980.11403321065387957No Hit
GGGGAGGGCGAGGAGGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAG517760.11036269607864349No Hit
CGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGG511020.10892603706371368No Hit
GAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTG492290.10493365971213575No Hit
CCCTCGTCCAAACAGTGCTCTACCTCCAATAATCATCACTTGAGGCTAGC485970.10358652544294339No Hit
CTCACGAGCAATTAGTATCGGTTAGCTTAACGCATTACTGCGCTTCCACA485270.10343731753338094No Hit
TGCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAG484160.10320071641964622No Hit
CTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCACCTTA480390.1023971252495742No Hit
CCCCATTCGGAAATCTCTGGATCAACGCTTACTTACAGCTACCCAAAGCA471520.10050644788126153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)