FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002446268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46914403
Sequences flagged as poor quality0
Sequence length76
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22412824.777385742284731No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG16001983.410888549514315No Hit
CGGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTT5702561.2155243667920064No Hit
GGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGT4890431.0424154816592253No Hit
GAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTG4808421.0249347092832024No Hit
GGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTC2447730.5217438235332548No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTGG2132770.4546087903964162No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG1684560.359070965903584No Hit
GGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAAC1554300.3313055054755786No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACC1379960.29414420982826955No Hit
GTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGCCCCC1202500.2563178732126251No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGCCCCCCC1193570.25441440659492137No Hit
GAGCGTTCTAAGGGCGTCGAAGCATGATCGCAAGGACATGTGGAGCGCTT1146900.2444665021102368No Hit
GTTTGATCCTGGCTCAGATTGAACGCTAGCGGGATGCCTTACACATGCAA1109280.2364476427420381No Hit
CGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGA1052680.224383117483132No Hit
GCGGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGT1036970.22103446568423774No Hit
GTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTCCCCCC921800.19648550147808552No Hit
GGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTTACTAACGACGAT917820.19563714793514475No Hit
GGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAGC869050.18524161972177286No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAGCC836300.17826082109581573No Hit
GCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGCC814130.1735351934458166No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGTGGCGGGGCGGGGCGGTTCG760010.1619992904950746No Hit
GTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGGGCCCCC739000.15752092166663614No Hit
AGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGG650680.1386951465629862No Hit
GTTCCGACCCGCACGAAAGGCGTAACGATTTGGGCACTGTCTCAACGAGA636210.135610805918174No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA619920.13213852470849943No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTCCCCCCCC585300.12475912780985404No Hit
GGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGCCCC575570.12268513786693608No Hit
CGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGG551760.11760993740024786No Hit
GGGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTG538900.11486877494742925No Hit
GGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGGGCCCC512350.10920953209188232No Hit
AGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGTGC503940.10741690563556781No Hit
AGTGAATAGGCCCAAGCGACTGTTTATCAAAAACACAGGTCTCTGCTAAA498720.10630424093854504No Hit
GGGAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGTGGGGCGGGGCGGTTCG494770.10546228202029982No Hit
CTCCGAATGCCAATTAATTTAACTTGGGAGTCAGAACATGGGTGATAAGG480860.10249730770313756No Hit
GGGAGCGGTCGGGCGGCGGTGGTCGGCGGGCGGCGGGGCGGGGCGGTTCG476550.10157861328854595No Hit
GAGCGGTCGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGCGGTTCGGG472620.1007409174534311No Hit
CGGAGGAGTTCGAAGGTACGCTAGGTACGGTCGGAAATCGTGCTGATAGT470720.10033592455604731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)