FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002446281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49786454
Sequences flagged as poor quality0
Sequence length76
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1090230.21898125140625602No Hit
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG1035750.20803851585814886No Hit
GGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGGGCGGGGGGACGAACC975970.19603123371670533No Hit
GGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCGAGCGGCGCG804690.1616283015456373No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG737460.1481246284380888No Hit
GGGGTGGGGCGGGGGAGGGCCGCGAGGGGGGTGCCCCGGGCGTGGGGGGG568410.11416960926761324No Hit
GGACGGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGG567950.11407721465762555No Hit
GGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCGAGCGGCGCGC564540.11339228939662985No Hit
GGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCGAGCGGCGC559240.11232774280329344No Hit
GGGGAGCGGGGGAGAGAGAGAGAGAGAGGGCGCGGGGCGGGGAGGGAGCG534890.10743685420937993No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA506140.1016621910851494No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)