FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002446420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41631
Sequences flagged as poor quality0
Sequence length251
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG1144527.49153275203574No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG28146.759386034445486No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG26766.427902284355408No Hit
CCTGTTTGCTACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG17974.3164949196512215No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTATCGTCCAGTA12523.0073743124114243No Hit
CCTGTTTGATACCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCCAGTG8652.0777785784631644No Hit
CCTGTTTGATCCCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG6091.4628522014844707No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG5441.3067185510797243No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTG4531.088131440513079No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGT4231.0160697557108884No Hit
CCTGTTTGCTCCCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTG4191.0064615310705964No Hit
CCTGTTTGCTACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG3570.857534049146069No Hit
CCTGTTTGCTACCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCCAGTG3490.8383175998654848No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGTG2550.6125243208186207No Hit
CCTGTTTGATACCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCTAGTG2350.5644831976171603No Hit
CCTGTTTGCTACCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTG2090.5020297374552617No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA1710.41075160337248684No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAACGTCAGTTATCGTCCAGTA1680.4035454348922678No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA1590.38192692945161055No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGATGCAGTCCAGTG1250.3002570200091278No Hit
CCTGTTTGATCCCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCCAGTG1250.3002570200091278No Hit
CCTGTTTGATCCCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG1210.2906487953688357No Hit
CCTGTTTGATACCCACACTTACGAGCATCAGTGTCAGTTGCAGTCCAGTG1210.2906487953688357No Hit
CCTGTTTGCTCCCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCCAGTG1200.2882467392087627No Hit
CCTGTTTGATACCCACACTTTCGAGCATCACTGTCAGTTGCAGTCCAGTG940.22579327904686414No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA910.21858711056664507No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTCGCATCCCAGGG900.21618505440657204No Hit
CCTGTTTGCTCCCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTG810.19456654896591483No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTCTCAGTTGCAGTCCAGTG800.1921644928058418No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGT690.16574187504503857No Hit
CCTGTTTGATACCCACACTTTCGAGCACCAGTGTCAGTTGCAGTCCAGTG690.16574187504503857No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCCGTG690.16574187504503857No Hit
CCTGTTTGATCCCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTG650.15613365040474644No Hit
CCTGTTTGCTCCCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCTAGTG640.15373159424467345No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCTAGTG630.15132953808460042No Hit
CCTGTTTGCTACCCACACTTTCGCGCATCAGCGTCAGTTGCAGTCCAGTG620.1489274819245274No Hit
CCTGTTTGCTACCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCTAGTG620.1489274819245274No Hit
CCTGTTTGATACCCACACTTTCGCGCATCAGCGTCAGTTGCAGTCCAGTG610.14652542576445438No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTA550.13211308880401623No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCCGTTGCAGTCCAGTG510.12250486416372415No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGTG500.12010280800365113No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGAGTCAGTTGCAGTCCAGTG490.11770075184357809No Hit
CCTGTTTGCTCCCCACACTTTCGCGCATCAGCGTCAGTTGCAGTCCAGTG480.11529869568350508No Hit
CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTACAGTCCAGCA420.10088635872306695No Hit
CCTGTTTGCTACCCACACTTTCGAGCATCAGTGTCAGATGCAGTCCAGTG420.10088635872306695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)