FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002446640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27946
Sequences flagged as poor quality0
Sequence length251
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG1156441.37980390753596No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC590621.13361482859801No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAC7132.551349030272669No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGAG2770.9911973090961139No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGCCCAGAG2760.987618979460388No Hit
CCTGTTCGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG2560.9160523867458671No Hit
CCTGTTTGCTACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAG1940.6941959493308524No Hit
CCTGTTCGCTACCCATGCTTTCGCGCCTCAGCGTCAGTTGCAGACCAGAG1630.583267730623345No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGAC1430.5117011379088242No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGCCCAGAC1250.4472912044657554No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG1110.39719458956559084No Hit
ACTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG1100.3936162599298647No Hit
CCTGTTCGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC1080.38645960065841267No Hit
CCTGTTCGCTACCCATGCTTTCGCGCCTCAGCGTCAGTTGCAGACCAGAC830.2970013597652616No Hit
CCTGTTCGCTCCCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG740.2647963930437272No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG590.2111214485078365No Hit
CCTGTTCTCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG570.20396478923638445No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGTG540.19322980032920634No Hit
CCTGTTCGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGAG520.18607314105775424No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGCG470.16818149287912404No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG450.16102483360767192No Hit
ACTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC440.1574465039719459No Hit
CCTGTTCGCTACCCATACTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG440.1574465039719459No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA430.15386817433621985No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAT420.1502898447004938No Hit
CCTGTTCGCTCCCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC410.14671151506476776No Hit
CCTGTCCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG400.14313318542904171No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG390.1395548557933157No Hit
CCTGTTCGCTACCCATGCTTTCGAGCATCAGCGTCAGTTGCAGACCAGAG370.1323981965218636No Hit
CCTGTTCGCCACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG360.12881986688613756No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGATGCAGACCAGAG360.12881986688613756No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGTC350.1252415372504115No Hit
CCTGTTCGCTACACATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG310.11092821870750734No Hit
CCTGTTCGATACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG310.11092821870750734No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGTG310.11092821870750734No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAG310.11092821870750734No Hit
CCTGTTCTCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC300.10734988907178128No Hit
CCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCA290.10377155943605526No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAAGCCAGAG280.1001932298003292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)