FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002446668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002446668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40147
Sequences flagged as poor quality0
Sequence length251
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA1479136.84210526315789No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG707917.632699828131614No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG591014.720900689964381No Hit
CCCGTTTGCTACCCTCGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA6201.5443246070690213No Hit
CCTGTTCGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGGCCCAGAG2400.5978030737041373No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG1330.3312825366777094No Hit
CCCGTTTGCTCCCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA1240.3088649214138042No Hit
CCCGTTTGCTACCCTTGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA1230.30637407527337035No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGAG1190.29641069071163473No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGCCCAGAG1080.2690113831668618No Hit
ACCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGAA1060.264029690885994No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACAGCCCAGAG990.24659376790295662No Hit
CCCGTTTGCTACCCTGGCTTTCGCGTCTCAGCGTCAGACACAGTCCAGAA930.2316486910603532No Hit
CCTGTTCGCTCCCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG780.19428599895384463No Hit
CCTGTTCGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG720.1793409221112412No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCA670.16688669140907167No Hit
ACTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG640.15941415298776995No Hit
CCTGTTAGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG630.15692330684733605No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGCG610.15194161456646824No Hit
CCCGTTTGCTACCCTCGCTTTCGCGTCTCAGCGTCAGACACAGTCCAGAA540.1345056915834309No Hit
CCTGTTTGCTACCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTA520.1295239993025631No Hit
CCTGTTCGCTACCCATGCTTTCGCGCCTCAGCGTCAGTTGCAGACCAGAG520.1295239993025631No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGTG500.12454230702169528No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAG500.12454230702169528No Hit
CCCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCAGCA500.12454230702169528No Hit
CCTGTTCGATACCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCAGTG480.11956061474082745No Hit
ACTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG480.11956061474082745No Hit
CCCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGTCACAGTCCAGAA480.11956061474082745No Hit
CCCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGCCACAGTCCAGAA420.10461553789822403No Hit
CCCGTTTGCTACCCTGGCTTTCGCATCTCAGCGTCAGACACAGTCCCGAA420.10461553789822403No Hit
CCCGTTTGCTACCCTGGCTTTCGCACCTCAGCGTCAGACACAGTCCAGAA420.10461553789822403No Hit
CCTGTTCGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACAGCCCAGAG410.10212469175779013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)