FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002448485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002448485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46910
Sequences flagged as poor quality0
Sequence length301
%GC59

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG816617.407802174376467No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG24805.286719249626945No Hit
CCTGTTTGCTACCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGAG8081.7224472393945853No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGCG6251.3323385205713068No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACAGACCAGAG5361.1426135152419528No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG5361.1426135152419528No Hit
CCTGTTTGCTCCCCACGCTCTCGCATCTGAGCGTCAGTCTTTGTCCAGGG4130.8804092943935196No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGCGCGTCAGTCTTTGTCCAGGG2870.611809848646344No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTCAGCGTCAGTCTTTGTCCAGGG2510.5350671498614368No Hit
CCTGTTTGCTCCCCACGCCTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG2450.5222767000639523No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGCG2100.4476657429119591No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGTG1810.38584523555745043No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGT1730.3687913024941377No Hit
CCTGTTTGCTCCCCACGCTCTCGCACCTGAGCGTCAGTCTTTGTCCAGGG1520.3240247282029418No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTCGTCCAGGG1170.24941377105094864No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCCGGG1150.24515028778512044No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGCGCGTCAGTCTTTGTCCAGGG1110.23662332125346405No Hit
CCTGTTTGCTCCCCACGCCTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG1110.23662332125346405No Hit
CCTGTTTGCTCCACACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG1080.2302280963547218No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGCGTCAGTCTTTGTCCAGGG1040.22170112982306547No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGA1000.2131741632914091No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTCAGCGTCAGTCTTTGTCCAGCG940.20038371349392453No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCATGG890.18972500532935407No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCCGTCTTTGTCCAGGG880.18759326369644No Hit
CCTGTTTGCTCCCCACACTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG870.1854615220635259No Hit
CCTGTTTGATCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG830.17693455553186954No Hit
CCTGTTTGCTACCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG820.17480281389895544No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCTGGG790.1684075890002132No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGT750.1598806224685568No Hit
CCTGTTTGCTCCCCACGCTCTCGCATCTGAGCGTCAGTCTTTGTCCAGCG660.14069494777233No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGC660.14069494777233No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGTG620.13216798124067364No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGACTTTGTCCAGGG610.13003623960775954No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCTAGGG600.12790449797484546No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTATTTGTCCAGGG580.12364101470901726No Hit
CCTGTTTGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAC570.12150927307610318No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTCTTTGTCCAGGG570.12150927307610318No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG560.11937753144318909No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCATTCTTTGTCCAGGG550.11724578981027499No Hit
CCTGTTTGCGCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG550.11724578981027499No Hit
CCTGTTTGCTACCCACGCTCTCGAGCCTCAGTGTCAGTTACAGTCCAGAG540.1151140481773609No Hit
CCCGTTTGCTCCCCACGCTTTCGCATCTGAGCGTCAGTCTTTGTCCAGGG510.10871882327861863No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGT500.10658708164570455No Hit
CCTGTTTGCTCCCCACGCTTTCGCATCTAAGCGTCAGTCTTTGTCCAGGG480.10232359837987635No Hit
CCTGTTTGCTCCCCACGCTTTCGCAACTGAGCGTCAGTCTTTGTCCAGGG470.10019185674696227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)