FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002450342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002450342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13446
Sequences flagged as poor quality0
Sequence length301
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGT486136.15201546928454No Hit
TGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGT295421.969358917150082No Hit
TGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCCATGCCGCGTGT138810.322772571768555No Hit
TAGGGAATCTTCGGCAATGGACGAAAGTCTGACCGAGCAACGCCGCGTGA5974.439982150825524No Hit
TGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGA4763.5400862710099656No Hit
TGAGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGC3692.7443105756358768No Hit
TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCCATGCCGCGTGT2651.9708463483563885No Hit
TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCCATGCCGCGTGT1941.4428082701175071No Hit
TGAGGAATATTGGTCAATGGAGGCAACTCTGAACCAGCCATGCCGCGTGC1691.2568793693291684No Hit
TGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGACGCCGCGTGA740.5503495463334821No Hit
TAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAATGCCGCGTGA620.46110367395507956No Hit
TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGG390.29004908522980816No Hit
TGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGT390.29004908522980816No Hit
TGGGGAATATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGA340.25286330507214044No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGA330.24542614904060686No Hit
TAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGA320.23798899300907334No Hit
TGGGGAATCTTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGT320.23798899300907334No Hit
TGAGGAATATTGGACAATGGGTGGAAGCCTGATCCAGCCATCCCGCGTGT260.19336605681987207No Hit
TGGGGAATATTGCACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGT260.19336605681987207No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCACGCCGCGTGT240.178491744756805No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGAACCAGCCATGCCGCGTGT230.17105458872527146No Hit
TGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGA200.14874312063067083No Hit
TGAGGAATATTGGTCAATGGACGAGAGTCTGAACCAGCCAAGTAGCGTGA200.14874312063067083No Hit
TGGGGAATATTGCACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGT200.14874312063067083No Hit
TGGGGAATATTGGACAATGGGGGAACCCTGATCCAGCCATGCCGCGTGTG190.1413059645991373No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGT160.11899449650453667No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCAGCGTGT150.11155734047300313No Hit
TGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGT140.10412018444146957No Hit
TGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCAGCGTGT140.10412018444146957No Hit
TGAGGAATATTGGTCAATGGACGCAAGTCTGAACCAGCCATGCCGCGTGC140.10412018444146957No Hit
TGGGGAATATTGGACAATGGGCGAAAGCCTGCTCCAGCCATGCCGCGTGT140.10412018444146957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)