FastQCFastQC Report
Fri 31 Mar 2023
EGAF00002452706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002452706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29497306
Sequences flagged as poor quality0
Sequence length20-75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA840320.28488025313226906No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA758830.25725400143321564No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA417350.14148749719720166No Hit
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG326690.11075248702373022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)