FastQCFastQC Report
Thu 9 May 2024
EGAF00002454731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5380546
Total Bases406 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT67170.12483863161842682No Hit
CGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGT61660.11459803521798717No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT61230.11379885981831583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)