FastQCFastQC Report
Wed 8 May 2024
EGAF00002454733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5431924
Total Bases409.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT71080.13085602817712472No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT66540.12249803200486604No Hit
CGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGT62980.11594418478609052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)