FastQCFastQC Report
Thu 9 May 2024
EGAF00002454735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5575936
Total Bases420.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT71310.12788884233965384No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT67190.12049994834947891No Hit
CGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGT65300.11711038290252973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)