FastQCFastQC Report
Wed 8 May 2024
EGAF00002454737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5469871
Total Bases412.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT69280.12665746596217717No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT65280.11934467924380666No Hit
CGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGT64950.1187413743395411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)