FastQCFastQC Report
Wed 8 May 2024
EGAF00002454749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4366675
Total Bases329.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA65890.1508928418075538No Hit
CCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCA50430.11548832922074577No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT45140.10337384852318984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)