FastQCFastQC Report
Sat 1 Apr 2023
EGAF00002454992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002454992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31868484
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGGTTCTAGCA398810.12514244480534437No Hit
GCGACCGGCAAGGCGGAGGTCGACCCACGCCACACGTCGCACGAACGCCTGTCCGGGAGGGACCACCGGGCCGCG358710.1125594803944863No Hit
GCGGACGCCGCCGGGTCTGCGCTTAGGGGGACGGAGGGCCCCCGGCGGGCCCTGCGAGGGAACCCCCAGCCGCGC358040.11234924133824503No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT328380.1030422407291166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)