FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002455924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002455924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40957367
Sequences flagged as poor quality0
Sequence length2-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC1844100.45024866954948545TruSeq Adapter, Index 6 (100% over 50bp)
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGT477470.11657731806832211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)