FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002455994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002455994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35399237
Sequences flagged as poor quality0
Sequence length2-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGATTTCTGTTGTGTTTCCTCCCTGTTGGAGGGTGTCGGAATAGACT559450.1580401295090061No Hit
GTCGGAATAGACTCTGAGAAACAGAGGGAGGTCTGGGGGTTCTGCAGGAA545780.1541784643550368No Hit
GCCCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAAC376410.10633280033691121No Hit
CGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTTG366430.10351353053174564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)