FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35426980
Sequences flagged as poor quality0
Sequence length5-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGAATAGACTCTGAGAAACAGAGGGAGGTCTGGGGGTTCTGCAGGAA1060820.29943845058201407No Hit
GTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCCAGTCCGGGGGCTGC897950.25346501451718434No Hit
GTTGGATTTCTGTTGTGTTTCCTCCCTGTTGGAGGGTGTCGGAATAGACT835080.23571865284593832No Hit
CGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTTG636660.17971049183418966No Hit
GTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAA572070.16147862448337397No Hit
GTGAGTTTGTGTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCCAGTC552140.15585296855673275No Hit
GTTGTGTTTCCTCCCTGTTGGAGGGTGTCGGAATAGACTCTGAGAAACAGAGGGAGGTCTGGGGGTTCTGCAGGA546290.1542016847047081No Hit
GTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAAAAAGCCTGGATAAGG480590.13565649682812364No Hit
CTCGACCTTGTCCATGTCCTTCCTGAAGCAGTAGAGCAGCCCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTG478840.13516252302623594No Hit
GTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCC466130.13157486187081147No Hit
CCTGGATAAGGGAATGGTTGGGAAGGCACTGCCCTCTTGAAGCCAGGGCA454250.12822148543285372No Hit
GTCAGAGGCGCCGTACACCAGGCTGTTGGCGAAGACACTCCTGAGGAACT431390.1217687762264805No Hit
GTCACAGGGATGCCACCCGGGCAGCTAGAAGCCACAGCTGCCCTCCACAG418600.11815853341154116No Hit
CCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTT408440.11529066265315305No Hit
GGCTTCTTCAAACTCCTGGTAGGTGTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAAA397440.11218568446985885No Hit
GTCATCGTTGTGTGAGTTTGTGTCGAACTTGCTGTAGGTCTGCTTGAAGA361200.10195619270962414No Hit
GCCCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAAC359450.10146221890773642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)