FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35426980
Sequences flagged as poor quality0
Sequence length2-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTACAGGCTCCCG915060.25829466694592657No Hit
CCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTA850060.23994706859009712No Hit
GCCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGC814950.23003654277050992No Hit
CCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCA770480.2174839627876833No Hit
CTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGC539810.1523725702840039No Hit
GTTTGAAGAAGCCTATATCCCAAAGGAACAGAAGTATTCATTCCTGCAGAACCCCCAGACCTCCCTCTGTTTCTC454940.12841625224616945No Hit
GGCAGATCTTCAAGCAGACCTACAGCAAGTTCGACACAAACTCACACAAC442990.1250431168561362No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG425520.12011184695957713No Hit
CGGCGCCTCTGACAGCAACGTCTATGACCTCCTAAAGGACCTAGAGGAAG405340.11441562334695196No Hit
CTTCGCCAACAGCCTGGTGTACGGCGCCTCTGACAGCAACGTCTATGACC395390.11160702944479038No Hit
GTCTGCACCAGCTGGCCTTTGACACCTACCAGGAGTTTGAAGAAGCCTAT378110.10672939098957913No Hit
GCCTGGTGTACGGCGCCTCTGACAGCAACGTCTATGACCTCCTAAAGGAC368660.10406193245938548No Hit
GGCATCCAAACGCTGATGGGGAGGCTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAAGCAGACCTACAGC365640.10320947481269925No Hit
CTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAAGCAGACCTACAG362860.10242476214455762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)