FastQCFastQC Report
Tue 5 Jul 2022
EGAF00002456062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44699594
Sequences flagged as poor quality0
Sequence length10-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG799980.17896806847954816No Hit
CTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCT740020.165554076397204No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC674380.15086937926102864No Hit
CGGAGTAGTAAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGACCGA584530.13076852554857657No Hit
CTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCATACAGGACTAGGAAGCAGATAAGGA528870.1183165108837454No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA521990.11677734701572458No Hit
AAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGCATCG496930.11117103211273015No Hit
CGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATA491230.10989585274532919No Hit
CGATAACGTTGTAGATGTGGTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTT482900.10803230114349585No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGGGCTACAACGT472270.10565420348113227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)