FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44699594
Sequences flagged as poor quality0
Sequence length2-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT554180.12397875470636266No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC547890.12257158308865176No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG484100.10830075995768551No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC447280.10006354867563227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)