FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42268572
Sequences flagged as poor quality0
Sequence length9-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG607330.14368358599859962No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC597790.14142658994962026No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG482620.11417939550926869No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA440260.10415776525405211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)