FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34841460
Sequences flagged as poor quality0
Sequence length2-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTACAGGCTCCCG555120.1593274219851866No Hit
CCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTA553370.1588251468222055No Hit
CCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCA426320.12235996998977655No Hit
GCCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGC396810.11389017567002072No Hit
CTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGC379780.10900232079826735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)