FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32642719
Sequences flagged as poor quality0
Sequence length7-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGAATAGACTCTGAGAAACAGAGGGAGGTCTGGGGGTTCTGCAGGAA862100.26410177411998065No Hit
GTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCCAGTCCGGGGGCTGC757810.23215284241487358No Hit
GTTGGATTTCTGTTGTGTTTCCTCCCTGTTGGAGGGTGTCGGAATAGACT626940.19206120666602558No Hit
CGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTTG613830.18804499710946262No Hit
GTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAA515630.157961718813926No Hit
GTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAAAAAGCCTGGATAAGG501960.1537739549208508No Hit
CCTGGATAAGGGAATGGTTGGGAAGGCACTGCCCTCTTGAAGCCAGGGCA476670.14602643854514694No Hit
GTGAGTTTGTGTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCCAGTC462910.14181110341941797No Hit
GGCTTCTTCAAACTCCTGGTAGGTGTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAAA448340.13734762719980526No Hit
CCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTT430570.13190384048583698No Hit
CTCGACCTTGTCCATGTCCTTCCTGAAGCAGTAGAGCAGCCCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTG426790.13074584871437944No Hit
GTTGTGTTTCCTCCCTGTTGGAGGGTGTCGGAATAGACTCTGAGAAACAGAGGGAGGTCTGGGGGTTCTGCAGGA412080.12623948391063872No Hit
GCCCGTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAAC407340.1247873989908745No Hit
GTCAGAGGCGCCGTACACCAGGCTGTTGGCGAAGACACTCCTGAGGAACT399880.12250205015090808No Hit
GTCACAGGGATGCCACCCGGGCAGCTAGAAGCCACAGCTGCCCTCCACAG375700.11509457897793379No Hit
GTAGTTCTTGAGTAGTGCGTCATCGTTGTGTGAGTTTGTGTCGAACTTGCTGTAGGTCTGCTTGAAGATCTGCCC363730.11142760503498499No Hit
GCTTCTTCAAACTCCTGGTAGGTGTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCATAGCGTTGTCAAAA362610.11108449636196052No Hit
CTTTGGGATATAGGCTTCTTCAAACTCCTGGTAGGTGTCAAAGGCCAGCTGGTGCAGACGATGGGCGCGGAGCAT335820.10287745944202747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)