FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47745217
Sequences flagged as poor quality0
Sequence length2-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTACAGGCTCCCG1965140.4115888718235378No Hit
CCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTA1685350.35298823754429687No Hit
CCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCA1364620.2858129223708419No Hit
CTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGC1211600.25376363877453945No Hit
GCCCAACTCCCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGC1175400.24618172748068148No Hit
GGCAGATCTTCAAGCAGACCTACAGCAAGTTCGACACAAACTCACACAAC846410.17727639608382134No Hit
CTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAAGCAGACCTACAG752950.1577016604616123No Hit
CTTCGCCAACAGCCTGGTGTACGGCGCCTCTGACAGCAACGTCTATGACC728910.15266660113828784No Hit
CGGCGCCTCTGACAGCAACGTCTATGACCTCCTAAAGGACCTAGAGGAAG655500.13729123903657198No Hit
CAGAAATCCAACCTAGAGCTGCTCCGCATCTCCCTGCTGCTCATCCAGTCGTGGCTGGAGCCCGTGCAGTTCCTC645110.13511510482819672No Hit
GTTTGAAGAAGCCTATATCCCAAAGGAACAGAAGTATTCATTCCTGCAGAACCCCCAGACCTCCCTCTGTTTCTC624640.13082776438108973No Hit
GGCATCCAAACGCTGATGGGGAGGCTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAAGCAGACCTACAGC615870.12899093117536778No Hit
CCCGAACCACTCAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTAC594630.12454231802946879No Hit
CAGGGTCCTGTGGACAGCTCACCTAGCTGCAATGGCTACAGGCTCCCGGA584270.12237246717299452No Hit
CCCAGACCTCCCTCTGTTTCTCAGAGTCTATTCCGACACCCTCCAACAGG583300.12216930546152927No Hit
CTTCAAGCAGACCTACAGCAAGTTCGACACAAACTCACACAACGATGACG571410.11967900365810465No Hit
CTGGAGCCCGTGCAGTTCCTCAGGAGTGTCTTCGCCAACAGCCTGGTGTA553220.1158691979554727No Hit
CGGACGTCCCTGCTCCTGGCTTTTGGCCTGCTCTGCCTGCCCTGGCTTCA538730.11283433898729583No Hit
GGAAGGCATCCAAACGCTGATGGGGAGGCTGGAAGATGGCAGCCCCCGGA529440.11088859434862344No Hit
GCCTGGTGTACGGCGCCTCTGACAGCAACGTCTATGACCTCCTAAAGGAC526450.11026235360915837No Hit
CCTAAAGGACCTAGAGGAAGGCATCCAAACGCTGATGGGGAGGCTGGAAGATGGCAGCCCCCGGACTGGGC515720.1080150080792386No Hit
CACAAACTCACACAACGATGACGCACTACTCAAGAACTACGGGCTGCTCTACTGCTTCAGGAAGGACATGGACA514420.10774272949686248No Hit
GTCTGCACCAGCTGGCCTTTGACACCTACCAGGAGTTTGAAGAAGCCTAT503680.10549328951630903No Hit
CCTAGAGGAAGGCATCCAAACGCTGATGGGGAGGCTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAAGC493030.10326269959145856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)