FastQCFastQC Report
Fri 1 Jul 2022
EGAF00002456127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002456127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47358715
Sequences flagged as poor quality0
Sequence length4-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAGCTTTAAGAGGCTGATTATCTGCCACGACCCCCCAGGCTGGGAGGC785450.16585120605573864No Hit
CCATGACGTACTTCCGGGGGTTCTCGGTCAGAGGCTGCTCGTCGCCATTTCCCGGGAACATGGGAGTCTCGGCCG559080.11805218954948418No Hit
GCTCCATCCTGTAGGGGCCCTCGTCCTTCTTCTCGGCCGCCACCAGCAGG532850.11251361021936512No Hit
GGCTGATTATCTGCCACGACCCCCCAGGCTGGGAGGCGGCAGCAGGGCAGGGGAGAGCAAGGGGCTTTGGGGTCG527210.11132269952848171No Hit
GCTGATTATCTGCCACGACCCCCCAGGCTGGGAGGCGGCAGCAGGGCAGG518410.10946454100369911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)