FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002463809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002463809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences286428
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACCATGACCATCAGATGGCGGGAAGATGAAGACAGATGGTGCAGCCAC3390.11835435083162262No Hit
CCACCATGACCATCAGATGGCGGGAAGATGAAGACAGATGGTGCAGCCAC3010.10508749144636698No Hit
CACCCATGACCATCAGATGGCGGGAAGATGAAGACAGATGGTGCAGCCAC2940.10264359629645145No Hit
ACCCCATGACCATCAGATGGCGGGAAGATGAAGACAGATGGTGCAGCCAC2880.10054882902509532No Hit
ACACCCTGACCATCAGATGGCGGGAAGATGAAGACAGATGGTGCAGCCAC2870.10019970114653597No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)