FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002465988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002465988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13593540
Sequences flagged as poor quality0
Sequence length50
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT750380.5520122057977539No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT541420.3982921299381912No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT474820.3492982696192456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)