FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002465990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002465990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27174218
Sequences flagged as poor quality0
Sequence length50
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT553500.20368571415744144No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT384740.1415827311019585No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT272650.10033407401088781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)