FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002466040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002466040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17155858
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT489900.28555843724050406No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT361720.21084343318766102No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT336400.19608462602103607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)